Spyglass MTG Blog

RAG vs. Prompt Stuffing: Overcoming Context Window Limits for Large, Information-Dense Documents

Written by Jeffrey Moore | Mar 6, 2025 5:10:37 PM

Modern AI systems, particularly Large Language Models (LLMs), excel at understanding and generating text. However, they face a core limitation known as the context window—the maximum amount of text an LLM can process at once. When tackling massive, information-dense documents, traditional techniques like Retrieval-Augmented Generation (RAG) can fall short if nearly all of the document is relevant. 

An emerging alternative strategy—Iterative Prompt Stuffing with Structured JSON Output—addresses these limitations by processing large texts in sequential chunks, capturing each segment’s essential information in a structured format. This article provides a comprehensive look at both RAG and iterative prompt stuffing, explaining how each method works and why prompt stuffing often proves superior for massive, detail-rich documents. 

What Is RAG (Retrieval-Augmented Generation)? 

Retrieval-Augmented Generation (RAG) is a technique that enhances an LLM’s responses by selectively fetching relevant parts of a large document (or set of documents) from an external knowledge base. Instead of relying exclusively on the model’s internal training, RAG “retrieves” document chunks based on a query and presents them to the LLM. This helps ground the model’s output in factual content. 

Strengths of RAG 
  1. Efficient for concise queries: RAG excels when only a few specific details are needed from a larger text. 
  2. Reduced hallucinations: Because RAG feeds the model real-world data from external sources, its responses tend to be more reliable. 
  3. Well-suited for dynamic content: If the underlying information frequently changes—such as financial data, regulatory updates, or real-time news—RAG can retrieve the latest content from an information source. 

Limitations of RAG for Large, Dense Documents 
  1. Chunking constraints: Documents must be split into chunks, and the system is typically configured to select how many chunks to retrieve. Critical information might be left out if the system is forced to pick only a few chunks. 
  2. Loss of document integrity: Splitting a document into disjointed pieces can disrupt logical flow, especially if concepts span multiple sections. 
  3. Context window exhaustion: If most of the document is relevant—for instance, 95% of a 300,000-token text—retrieving all of it may exceed the LLM’s context limit. 
  4. Performance degradation with increased context length: While GPT-4o has a context window of 128K tokens, studies have shown that LLMs often experience a decline in reasoning performance when processing inputs that approach or exceed approximately 50% of their maximum context length. This suggests that for GPT-4o, performance issues might arise with inputs around 64K tokens. 

For queries where the documents every page matters, RAG often struggles to provide a complete analysis without sacrificing vital details. 

Introducing Iterative Prompt Stuffing with JSON Output 

terative Prompt Stuffing is a method designed to process a query against entire document that exceed an LLM’s context window. It works by breaking the document into segments, passing each segment through the model, and returning a structured (JSON) summary that captures essential information. This JSON is then carried forward to the next iteration, allowing the model to “remember” previously processed fragment without retrieving them from an external database. 

How It Works 
  1. Chunk the document dynamically: Instead of retrieving small pieces, you select sizable fragments (e.g., 40,000–60,000 tokens based on the exact LLM being used) and feed them to the LLM in sequence along with the prompt. 
  2. Produce structured JSON summaries: For each segment, the model outputs a JSON object containing key points, references (like page numbers or section titles), and any critical facts. 
  3. Iteratively build the context: The JSON summary from each step is reintroduced alongside the next text segment, creating a chain of prompts where new content is processed in the light of previously extracted data. 
  4. Generate compressed, information-rich output: By continuously condensing key insights, the final JSON structure captures the entire document without exceeding the LLM’s context limit. 
Advantages Over Traditional RAG 
  • Full-document coverage: Every section is processed in turn, ensuring no portion is inadvertently excluded. 
  • No dependency on external retrieval: You do not need to maintain a vector database or indexing system. 
  • Higher accuracy: Since all content is examined, crucial details aren’t missed due to the configured chunk selection limit. 
  • Scalability: Large documents can be handled in segments, limited only by the size of the final JSON output rather than the LLM’s prompt window. 
RAG vs. Prompt Stuffing: A Direct Comparison 

Feature 

Standard RAG 

Iterative Prompt Stuffing (JSON) 

Efficiency 

Moderate; relies on external retrieval 

High; processes entire document in chunks 

Accuracy 

High (for retrieved chunks only) 

Extremely high (no chunks are excluded) 

Scalability 

Constrained by retrieval architecture and context window 

Constrained only by JSON output size 

Best Use Cases 

Quick data lookups, dynamic queries 

Full, dense document processing where completeness is critical 

 

Final Thoughts: The Future of Large-Scale LLM Processing 

As organizations grapple with ever-growing volumes of text—be it legal contracts, technical manuals, or scientific reports—techniques that overcome the context window paradox are becoming indispensable. While RAG is valuable for targeted lookups and dynamic queries, it loses ground when documents demand full comprehension. 

The iterative prompt stuffing with structured JSON reimagines how LLMs interact with large documents, ensuring that no detail is lost during processing. By sequentially building a detailed, compressed representation, this approach sidesteps the context window limit in a more scalable and less infrastructure-heavy way. 

Conclusion 

Both Retrieval-Augmented Generation and iterative prompt stuffing have their merits, but when it comes to large, information-dense documents requiring near-total comprehension, prompt stuffing with a JSON loop emerges as the stronger choice. It ensures every page, section, and crucial piece of information is methodically processed and preserved. 

This refined method embodies the next evolution in handling massive textual data. By iterating through chunks and capturing each step’s output in JSON, we substantially reduce the chance of missing critical details—thereby redefining what’s possible within the constraints of today’s LLMs. 

For more about how Spyglass MTG can help with your RAG and Prompt Stuffing needs, contact us today.